Publications 2006-August 2008

Refereed articles

  1. S. Åberg, K. Podgórski, and I. Rychlik, Fatigue damage assessment for a spectral model of non-Gaussian random loads, Probab. Eng. Mech. (2008), to appear.
  2. S. Åberg and I. Rychlik, Doppler-shift approximations of encountered wave statistics, Ocean Eng. 34 (2007), 2300–2310. 
  3. K. Adolfsson, M. Enelund, and S. Larsson, Space-time discretization of an integro-differential equation modelling quasi-static fractional order viscoelasticity, J. Vib. Control 14 (2008), 1631–1649.
  4. F. A. Aliev, M. Asadzadeh, V. B. Larin, and N. I. Valieva, An inverse problem of the synthesis of optimal output variable regulators, Appl. and Comput. Math. 5 (2006), 35–44.
  5. J. Andersson, O. Häggström, and M. Månsson, The volume fraction of a non-overlapping germ-grain model, Electron. Comm. Probab. 11 (2006), 78–88 (electronic).
  6. M. Anguelova, G. Cedersund, M. Johansson, C.-J. Franzén, and B. Wennberg, Conservation laws and unidentifiability of rate expressions in biochemical models, IET Systems Biology 1 (2007), no. 4, 230–237.
  7. M. Anguelova and B. Wennberg, State elimination and identifiability of the delay parameter for nonlinear time-delay systems, Automatica 44 (2008), no. 5, 1373–1378.
  8. L. Arkeryd, R. Esposito, R. Marra, and A. Nouri, Stability of the laminar solution of the Boltzmann equation for the Benard problem, Bull. Inst. Math. Acad. Sin. 3 (2008), 1–42.
  9. L. Arkeryd and A. Nouri, The stationary nonlinear Boltzmann equation in a Couette setting with multiple, isolated Lq-solutions and hydrodynamic limits, J. Stat. Phys. 118 (2005), 849–881.
  10. L. Arkeryd and A. Nouri, On a Taylor-Couette type bifurcation for the stationary, nonlinear Boltzmann equation, J. Stat. Phys. 124 (2006), 401–443.
  11. M. Arvidsson and I. Gremyr, Principles of robust design methodology, Quality and Reliability Engineering International 24 (2007), no. 1, 23–35.
  12. M. Asadzadeh, Ion transport in inhomogeneous media, I. Bipartition model and standard Galerkin method for broad beams, Appl. Comput. Math. (2008), to appear.
  13. M. Asadzadeh and A. Kadem, Chebyshev spectral SN method for the neutron transport equation, Journal of Comp. Math. with Appl. 52 (2006), 509–524.
  14. M. Asadzadeh and E. W. Larsen, Linear transport equations in flatland with small angular diffusion and their finite element approximations, Math. and Computer Mod. 47 (2008), 495–514.
  15. M. Asadzadeh, A. Schatz, and W. Wendland, A new approach to Richardson extrapolation in the finite element method for second order elliptic problems, Math. Comp. (2008), to appear. 
  16. M. Asadzadeh and A. Sopasakis, A nodal method for absorption-diffusion problems, Appl. and Comput. Math. 5 (2006), 45–58.
  17. M. Asadzadeh and A. Sopasakis, Convergence of a hp streamline diffusion scheme for Vlasov-Fokker-Planck system, Math. Mod. Meth. Appl. Sci. (M3AS) 17 (2007), 1159–1182. 
  18. M. Åstrand, P. Mostad, and M. Rudemo, Improved covariance matrix estimators for weighted analysis of microarray data, J. Computational Biology 14 (2007), no. 10, 1353–1367.
  19. M. Åstrand, P. Mostad, and M. Rudemo, Empirical Bayes models for multiple probe type microarrays at the probe level, BMC Bioinformatics 9 (2008), article 156.
  20. V. Bagland, B. Wennberg, and Y. Wondmagegne, Stationary states for the non-cutoff Kac equation with a Gaussian thermostat​, Nonlinearity 20 (2007), no. 3, 583–604.
  21. A. Baxevani, C. Borget, and I. Rychlik, Spatial models for the variability of the significant wave height on the world oceans, Int. J. Offshore Polar Eng. 18 (2008), no. 1, March 2008, 1–7.
  22. A. Baxevani, S. Caires, and I. Rychlik, Spatio-temporal statistical modelling of significant wave height, Environmetrics (2008), to appear.
  23. A. Baxevani and I. Rychlik, Fatigue life prediction for a vessel sailing the North Atlantic route, Probab. Eng. Mech. 22 (2007), 159–169.
  24. A. Bengtsson, K. Bogsjö, and I. Rychlik, Uncertainty of estimated rainflow damage for random loads, Marine Structures (2008), 1–19, to appear.
  25. A. Bengtsson and I. Rychlik, Uncertainty in fatigue life prediction of structures subject to Gaussian loads, Probab. Eng. Mech. (2008), to appear.
  26. B. Bergman, Conceptualistic pragmatism: A framework for Bayesian analysis?, IIE Transactions 41 (2009), no. 1, 86–93.
  27. J. van den Berg, O. Häggström, and J. Kahn, Proof of a conjecture of N. Konno for the 1D contact process, Dynamics & stochastics, IMS Lecture Notes Monogr. Ser., vol. 48, Inst. Math. Statist., Beachwood, OH, 2006, pp. 16–23.
  28. J. van den Berg, O. Häggström, and J. Kahn, Some conditional correlation inequalities for percolation and related processes, Random Structures Algorithms 29 (2006), no. 4, 417–435.
  29. K. Bogsjö and I. Rychlik, Vehicle fatigue damage caused by road irregularities, Fatigue Fract. Eng. Mater. Struct. (2008), to appear.
  30. E. Brodin and H. Rootzén, Univariate and bivariate GPD methods for predicting extreme wind storm losses, Insurance: Mathematics and Economics (2008), to appear.
  31. E. I. Broman, O. Häggström, and J. E. Steif, Refinements of stochastic domination, Probab. Theory Related Fields 136 (2006), no. 4, 587–603.
  32. M. Daneva, T. Larsson, M. Patriksson, and C. Rydergren, A comparison of feasible direction methods for the stochastic transportation problem, Computational Optimization and Applications (2008), to appear.
  33. P. Degond and B. Wennberg, Mass and energy balance laws derived from high-field limits of thermostatted boltzmann equations, Communications in mathematical sciences 5 (2007), no. 2.
  34. M. Deijfen and O. Häggström, The initial configuration is irrelevant for the possibility of mutual unbounded growth in the two-type Richardson model, Combin. Probab. Comput. 15 (2006), no. 3, 345–353.
  35. M. Deijfen and O. Häggström, Nonmonotonic coexistence regions for the two-type Richardson model on graphs, Electron. J. Probab. 11 (2006), no. 13, 331–344 (electronic).
  36. M. Deijfen and O. Häggström, The two-type Richardson model with unbounded initial configurations, Ann. Appl. Probab. 17 (2007), no. 5–6, 1639–1656.
  37. M. Deijfen and O. Häggström, The pleasures and pains of studying the two-type Richardson model, Analysis and Stochastics of Growth Processes and Interface Models (P. Morters, R. Moser, M. Penrose, H. Schwetlick, and J. Zimmer, eds.), Oxford University Press, 2008, pp. 39–54.
  38. D. Dubhashi and O. Häggström, A note on conditioning and stochastic domination for order statistics, J. Appl. Probab. 45 (2008), 575–579.
  39. D. Dubhashi, O. Häggström, G. Mambrini, A. Panconesi, and C. Petrioli, Blue pleiades, a new solution for device discovery and scatternet formation in multi-hop Bluetooth networks, Wirel. Netw. 13 (2007), no. 1, 107–125.
  40. D. Dubhashi, O. Häggström, L. Orecchia, A. Panconesi, C. Petrioli, and A. Vitaletti, Localized techniques for broadcasting in wireless sensor networks, Algorithmica 49 (2007), no. 4, 412–446.
  41. K. Eriksson and O. Häggström, Instability of matchings in decentralized markets with various preference structures, Internat. J. Game Theory 36 (2008), 409–420.
  42. L. Fainsilber, P. Kurlberg, and B. Wennberg, Lattice points on circles and discrete velocity models for the Boltzmann equation, SIAM J. Math. Anal. 37 (2006), no. 6, 1903–1922.
  43. A.-L. Fougeres, J. Nolan, and H. Rootzén, Mixture models for extremes, Scand J. Statist (2008), to appear.
  44. P. Gennemark and D. Wedelin, Benchmarks for identification of ordinary differential equations, Bioinformatics (2008), to appear.
  45. P. Gennemark and D. Wedelin, Efficient algorithms for ordinary differential equation model identification of biological systems, IET Systems Biology 1 (2007), no. 2, 120–129.
  46. G. Guillot, M. Olsson, M. Benson, and M. Rudemo, Discrimination and scoring using small sets of genes for two-sample microarray data, Mathematical Biosciences 205 (2007), no. 2, 195–203, with software.
  47. L. Gunnarsson, A. Jauhiainen, E. Kristiansson, O. Nerman, and D. G. J. Larsson, Evolutionary conservation of human drug targets in organisms used for environmental risk assessments, Environmental Science and Technology 42 (2008), 5807–5813.
  48. L. Gunnarsson, E. Kristiansson, L. Förlin, O. Nerman, and D. G. J. Larsson, Sensitive and robust gene expression changes in fish exposed to oestrogen – a microarray approach, BMC Genomics 8 (2007), no. 149.
  49. S. Gupta and I. Rychlik, Rain-flow fatigue damage due to nonlinear combination of vector Gaussian loads, Probab. Eng. Mech. 22 (2007), no. 3, 231–249.
  50. O. Häggström, Intelligent design and the NFL theorems, Biology & Philosophy 22 (2007), 217–230.
  51. O. Häggström, Problem solving is often a matter of cooking up an appropriate Markov chain, Scand. J. Statist. 34 (2007), no. 4, 768–780.
  52. O. Häggström, Computability of percolation thresholds, In and Out of Equilibrium 2 (V. Sidoravicius and M. E. Vares, eds.), Birkhäuser, Boston, 2008, pp. 321–329.
  53. O. Häggström and J. Jonasson, Uniqueness and non-uniqueness in percolation theory, Probab. Surv. 3 (2006), 289–344 (electronic).
  54. O. Häggström, G. Kalai, and E. Mossel, A law of large numbers for weighted majority, Adv. in Appl. Math. 37 (2006), no. 1, 112–123.
  55. O. Häggström and P. Mester, Some two-dimensional finite energy percolation processes, Electron. Comm. Probab. (2008), to appear.
  56. O. Häggström and J. S. Rosenthal, On variance conditions for Markov chain CLTs, Electron. Comm. Probab. 12 (2007), 454–464 (electronic).
  57. A. Herbertsson, Pricing synthetic CDO tranches in a model with default contagion using the matrix-analytic approach, The Journal of Credit Risk 4 (2008), no. 4, 3–35.
  58. A. Herbertsson and H. Rootzén, Pricing k-th-to-default swaps under default contagion: the matrix-analytic method, J. Computational Finance 12 (2008), no. 1, 49–78.
  59. P. Jagers and K. C. Hårding, Viability of small populations hit by recurring catastrophes, Math. Popul. Stud. (2009), invited paper in special issue on extinction. To appear.
  60. P. Jagers, F. C. Klebaner, and S. Sagitov, On the path to extinction, Proc. Nat. Acad. Sci. 104 (2007), 6107–6111.
  61. P. Jagers and A. Lagerås, General branching processes conditioned on extinction are still branching processes, Elect. Comm. in Probab. 13 (2008), 540–547.
  62. P. Jagers, F. C. Klebaner, and S. Sagitov, Markovian paths to extinction, Adv. in Appl. Probab. 39 (2007), no. 2, 569–587.
  63. P. Johannesson, T. Svensson, L. Samuelsson, B. Bergman, and J. de Maré, Variation mode and effect analysis: an application to fatigue life prediction, Quality and Reliability Engineering International (2008), in press, available online August 28, 2008.
  64. J. K. Jonasson, N. Lorén, P. Olofsson, M. Nydén, and M. Rudemo, A pixel-based likelihood framework for analysis of fluorescence recovery after photobleaching data, J. Microsc. 232 (2008), 260–269.
  65. E. Kristiansson, A. Sjögren, M. Rudemo, and O. Nerman, Quality optimised analysis of general paired microarray experiments, Statistical Applications in Genetics and Molecular Biology 5 (2006), no. 1, article 10.
  66. M. Kvarnström and C. Glasbey, Estimation of centres and radial intensity profiles of spherical nanoparticles in digital microscopy, Biom. J. 49 (2007), 300–311.
  67. M. Kvarnström, A. Westergård, N. Lorén, and M. Nydén, Brownian dynamics simulations in hydrogels using an adaptive time stepping algorithm, Phys. Rev. E 79 (2009), no. 1, article 016102.
  68. N. Lalam, Statistical inference for quantitative polymerase chain reaction using a hidden Markov model: A Bayesian approach, Statistical Applications in Genetics and Molecular Biology 6 (2007), article 10.
  69. N. Lalam, A quantitative approach for polymerase chain reaction based on a hidden Markov model, Journal of Mathematical Biology (2008), to appear.
  70. T. Larsson, J. Marklund, C. Olsson, and M. Patriksson, Convergent Lagrangian heuristics for nonlinear minimum cost network flows, European J. Oper. Res. 189 (2008), no. 2, 324–346.
  71. C. Lautensack, Fitting three-dimensional Laguerre tessellations to foam structures, J. Appl. Stat., 985–995.
  72. C. Lautensack, A. Särkkä, J. Freitag, and K. Schladitz, Anisotropy analysis of pressed point processes, Adv. Stat. Anal., to appear.
  73. C. Lautensack and S. Zuyev, Random Laguerre tessellations, Adv. in Appl. Probab. 40 (2008), no. 3, 630–650.
  74. C. Lindberg, The estimation of a stochastic volatility model based on the number of trades, Appl. Stoch. Models Bus. Ind., to appear.
  75. C. Lindberg, News-Generated dependence and optimal portfolios for N stocks in a market of Barndorff-Nielsen and Shephard type, Mathematical Finance 16, 549–568.
  76. C. Lindberg, Portfolio optimization and a factor model in a stochastic volatility market, Stochastics 78 (2006), 259–279.
  77. C. Lindberg, Portfolio optimization when expected stock returns are determined by exposure to risk, Bernoulli (2008), to appear.
  78. G. M. Marchetti and N. Wermuth, Matrix representations and independencies in directed acyclic graphs, Annals of Statistics 46 (2008), to appear.
  79. C. Molin, A. Jauhiainen, J. Warringer, O. Nerman, and P. Sunnerhagen, mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress, RNA (2009), to appear.
  80. S. Nelander, W. Wang, B. Nilsson, Q.-B. She, C. Pratilas, N. Rosen, P. Gennemark, and C. Sander, Models from experiments: combinatorial drug perturbations of cancer cells, Molecular Systems Biology 4 (2008), article 216.
  81. R. Nisslert, M. Kvarnström, N. Lorén, M. Nydén, and M. Rudemo, Identification of the three-dimensional gel microstructure from transmission electron micrographs, J. Microsc. 225 (2007), 10–21.
  82. V. Olsbo, On the correlation between the volumes of the typical Poisson-Voronoi cell and the typical Stienen sphere, Adv. in Appl. Probab. 39 (2007), no. 4, 883–892.
  83. M. Patriksson, On the applicability and solution of bilevel optimization models in transportation science: A study on the existence, stability and computation of optimal solutions to stochastic mathematical programs with equilibrium constraints, Transp. Res. B 42 (2008), no. 10, 843–860.
  84. M. Patriksson, Robust bilevel optimization models in transportation science, Phil. Trans. R. Soc. A 366 (2008), no. 1872, 1989–2004.
  85. K. Podgórski and I. Rychlik, Envelope crossing distributions for Gaussian fields, Probab. Eng. Mech. 23 (2008), no. 4, 363–377.
  86. H. Rootzén, Weak convergence of the tail empirical function for dependent sequences, Stoch. Proc. Appl., to appear.
  87. I. Rychlik and S. Gupta, Rain-flow fatigue damage for transformed Gaussian loads, Int. J. Fatigue 29 (2007), 406–420.
  88. A. Särkkä and E. Renshaw, The analysis of marked point patterns evolving through space and time, Comput. Statist. Data Anal. 51 (2006), 1698–1718.
  89. H. Schmidt, SBaddon: High performance simulation for the systems biology toolbox for Matlab, Bioinformatics 23 (2007), no. 5, 646–647.
  90. H. Schmidt, G. Drews, J. Vera, and O. Wolkenhauer, SBML export interface for the systems biology toolbox for Matlab, Bioinformatics 23 (2007), no. 10, 1297–1298. 
  91. H. Schmidt, M. Madsen, S. Danø, and G. Cedersund, Complexity reduction of biochemical rate expressions, Bioinformatics 24 (2008), no. 6, 848–854.
  92. A. Sjögren, E. Kristiansson, M. Rudemo, and O. Nerman, Weighted analysis of general microarray experiments, BMC Bioinformatics 8 (2007), no. 387.
  93. M. Sundén and B. Wennberg, Brownian approximation and Monte Carlo simulation of the non-cutoff Kac equation, J. Stat. Phys. 130 (2007), 296–312.
  94. M. Sundén and B. Wennberg, The Kac master equation with unbounded collision rate, Markov Processes and Related Fields (2008), to appear.
  95. E. Svensson, T. Berntsson, A.-B. Strömberg, and M. Patriksson, An optimization methodology for identifying robust process integration investments under uncertainty, Energy Policy 37 (2009), no. 2, 680–685.
  96. T. Svensson and J. de Maré, On the choice of differential quotients for evaluating prediction intervals, Measurement 41 (2007), no. 7, 755–762.
  97. M. Thorsen, G. Lagniel, E. Kristiansson, C. Junot, O. Nerman, J. Labarre, and M. J. Tamás, Quantitative transcriptome, proteome and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite, Physiological Genomics 30 (2007), 35–43.
  98. B. Wennberg and Y. Wondmagegne, The Kac equation with a thermostatted force field, J. Stat. Phys. 124 (2006), no. 2–4, 859–880.
  99. N. Wermuth and D. R. Cox, Distortions of effects caused by indirect confounding, Biometrika 95 (2008), 17–33.
  100. N. Wermuth, D. R. Cox, and G. M. Marchetti, Covariance chains, Bernoulli 12 (2006), 841–862.
  101. N. Wermuth, M. Wiedenbeck, and D. R. Cox, Partial inversion for linear systems and partial closure of independence graphs, BIT, Numerical Mathematics 46 (2006), 883–901.

Invited survey articles

  1. L. Arkeryd, On stationary kinetic systems of Boltzmann type and their fluid limits, Banach Center Publ. 66 (2005), 13–27.
  2. L. Arkeryd and A. Nouri, Asymptotic techniques for kinetic problems of Boltzmann type, Riv. Mat. Univ. Parma (7) 6 (2007), 1–74.
  3. M. Benson, L.-O. Cardell, S. Hohmann, M. Jirstrand, M. Langston, R. Mobini, and O. Nerman, Systems biology may radically change healthcare – individually based prediction, prevention, and treatment, Läkartidningen 104 (2007), no. 42, 3037–3041 (in Swedish).
  4. G. Cedersund, P. Strålfors, and M. Jirstrand, Core-box modelling for biosimulation of drug action, Biosimulation in Drug Development (Bertau et al., eds.), Wiley-VCH, Weinheim, 2007.
  5. S. Larsson, Semilinear parabolic partial differential equations–-theory, approximation, and application, New Trends in the Mathematical and Computer Sciences, Proceedings of an international workshop (Covenant University, Ota, Nigeria) (G. O. S. Ekhaguere, C. K. Ayo, and M. B. Olorunsaiye, eds.), Publications of the ICMCS, vol. 3, 2006, June 18–23 2006, pp. 153–194.
  6. M. Patriksson, A survey on the continuous nonlinear resource allocation problem, European J. Oper. Res. 185 (2008), no. 1, 1–46.

Refereed conference contributions

  1. M. Anguelova and B. Wennberg, Identifiability of the time-lag parameter in delay systems with applications to systems biology, Proceedings of FOSBE 2007 (Foundation of Systems Biology in Engineering) (Stuttgart, Germany), 9–13 September 2007.
  2. M. Anguelova and B. Wennberg, State elimination and identifiability of delay parameters for nonlinear systems with multiple time-delays, Proceedings of IFAC Workshop on Time Delay Systems – TDS'07 (Nantes, France), 17–19 September 2007.
  3. A. Asadzadeh, On convergence of a h-p streamline diffusion and discontinuous Galerkin methods for the Vlasov-Poisson-Fokker-Planck system, Journal of American Institute of Physics (AIP) (2008), to appear.
  4. D. R. Cox and N. Wermuth, Some interpretational issues connected with observational studies. Invited lecture, Proceedings of the 56th Session of the International Statistical Institute (Lisbon), 2007.
  5. F. Edelvik and E. Abenius, On the modeling of thin sheets and coatings in the time-domain finite-element method, European conference on Antennas and Propagation – EuCAP (Nice, France), 2006.
  6. F. Edelvik and E. Abenius, Time domain finite element modeling of thin sheets and coatings using shell elements, EMB07 (Gothenburg, Sweden), October 2007, pp. 35–41.
  7. L. Fainsilber, P. Kurlberg, and B. Wennberg, The Boltzmann equation on a two-dimensional lattice, theoretical and numerical results, Bulletin of the Institute of Mathematics, Academia Sinica, New Series 2 (2007), no. 2, 667–685.
  8. S. Jakobsson, F. Edelvik, and B. Andersson, Multiobjective optimization in computational electromagnetics, EMB07 (Gothenburg, Sweden), October 2007, pp. 99–104.
  9. K. Kraft, S. Larsson, and M. Lidberg, Using an adaptive FEM to determine the optimal control of a vehicle during a collision avoidance manoeuvre, Proceedings of the 48th Scandinavian Conference on Simulation and Modeling (SIMS 2007) (D. F. P. Bunus and C. Führer, eds.), Linköping University Electronic Press, 2007.
  10. C. Lautensack, K. Schladitz, and A. Särkkä, Modeling the microstructure of sintered copper, Proceedings of the Stereology, Spatial Statistics and Stochastic Geometry 6th International Conference (Prague, Czech Republic), 26–29 June 2006.
  11. K. Podgórski and I. Rychlik, Envelope and its distributions, IWAP2008 proceedings, 2008, to appear.
  12. D. Wedelin and P. Gennemark, Design and evaluation of identification algorithms for ordinary differential equations, 5th Workshop on Computation of Biochemical Pathways and Genetic Networks (Heidelberg, Germany), 2008.

Manuscripts

  1. T. Almgren, N. Andréasson, D. Anevski, M. Patriksson, A.-B. Strömberg, and J. Svensson, Optimization of opportunistic replacement activities: A case study in the aircraft industry, submitted to European J. Oper. Res., 2007.
  2. T. Almgren, N. Andréasson, M. Patriksson, A.-B. Strömberg, and A. Wojciechowski, The replacement problem: A polyhedral and complexity analysis, submitted, 2009.
  3. M. Asadzadeh, F. A. Aliev, C. C. Arcasoy, V. B. Larin, G. H. Mammadova, N. A. Safarova, and N. I. Velieva, Computational algorithms for optimization problems for periodic systems, 2006.
  4. M. Asadzadeh, A. Schatz, and W. Wendland, Asymptotic error expansions for the finite element method for second order elliptic problems in RN, N≥2, I: Local interior expansions. Submitted to Math. Comp.
  5. M. Axelson-Fisk and O. Häggström, Biased random walk in a one-dimensional percolation model, submitted, 2009.
  6. M. Axelson-Fisk and O. Häggström, Conditional percolation on one-dimensional lattices, submitted, 2009.
  7. F. E. Benth, M. Groth, and C. Lindberg, The implied risk aversion from utility indifference option pricing in a stochastic volatility model, submitted.
  8. C. Comas, J. Mateu, and A. Särkkä, A third order point process characteristic for multi-type point processes, submitted.
  9. C. Cromvik and M. Patriksson, On the robustness of global optimal solutions and stationary solutions to stochastic mathematical programs with equilibrium constraints, submitted, 2008.
  10. S. Eckel, F. Fleischer, P. Grabarnik, M. Kazda, A. Särkkä, and V. Schmidt, Modelling tree roots in mixed stands by inhomogeneous marked Gibbs point processes, provisionally accepted for publication in Biometrical Journal.
  11. L. Fernandez-Ricaud, D. Dalevi, A. Blomberg, and O. Nerman, Testing of chromosomal clumping of gene properties, Stat. Appl. Genet. Mol. Biol. (2009), accepted up to minor revision.
  12. M. Geissert, M. Kovács, and S. Larsson, Rate of weak convergence of the finite element method for the stochastic heat equation with additive noise.
  13. A. B. Gjuvsland, M. Molin, K. K. Sundsaasen, S. Karoliussen, P. R. Berg, S. Lien, O. Nerman, T. Ådnøy, E. Plahte, A. Blomberg, and S. W. Omholt, Allele interaction motifs reveal gene regulatory architecture, submitted, 2008.
  14. P. Grabarnik and A. Särkkä, Modelling the spatial structure of forest stands by multivariate point processes with hierarchical interactions, submitted, 2008.
  15. G. Guillot, N. Lorén, and M. Rudemo, Bayesian spatial prediction of weed intensities from exact count data and image-based indices, submitted to J. Royal Statististical Soc., Series C, 2008.
  16. A. Herbertsson, Modelling default contagion using multivariate phase-type distribution, Review of Derivatives Research, accepted up to minor revision.
  17. S. Jakobsson, M. Saif-Ul-Hasnain, R. Rundqvist, F. Edelvik, B. Andersson, M. Patriksson, M. Ljungqvist, D. Lortet, and K. Wallesten, Combustion engine optimization: A multiobjective approach, submitted to Optim. Eng., 2008.
  18. S. Jakobsson, J. Rudholm, M. Patriksson, and A. Wojciechowski, A method for simulation based optimization using radial basis functions, submitted to Optim. Eng., 2008.
  19. M. Kovács, S. Larsson, and F. Lindgren, Strong convergence of the finite element method with truncated noise for semilinear parabolic stochastic equations, submitted to Numer. Algorithms, 2008.
  20. K. Kraft and S. Larsson, The dual weighted residuals approach to optimal control of ordinary differential equations, submitted to SIAM J. Numer. Anal., 2008.
  21. M. Kvarnström, A. Westergård, N. Lorén, and M. Nydén, An adaptive time stepping algorithm for Brownian dynamics simulations, submitted, 2008.
  22. N. Lalam, A moment estimator of the initial number of individuals from a population-size-dependent branching process used to model polymerase chain reactions, 2007.
  23. S. Larsson and F. Saedpanah, The continuous Galerkin method for an integro-differential equation modeling dynamic fractional order viscoelasticity, submitted to IMA J. Numer. Anal., 2007.
  24. S. Larsson and E. D. Svensson, Pointwise a posteriori error estimates for the Stokes equations in polyhedral domains, 2006.
  25. J. Lennartsson, A. Baxevani, and D. Chen, Modelling precipitation in Sweden using multiple step Markov chains and a composite model, submitted, 2008.
  26. P. Lindroth, M. Patriksson, and A.-B. Strömberg, Approximating the Pareto set using a reduced set of objective functions, submitted, 2009.
  27. P. Nyman, M. Röding, and M. Rudemo, Detection of rectangular road signs in color images, submitted, 2008.
  28. V. Olsbo and L. Waller, Development and evaluation of spatial point process models of epidermal nerve fibres, submitted, 2008.
  29. C. Olsson and K.-A. Johansson, Treatment plan evaluation: A systematic analysis of the influence of the spatial dose distribution and the fractionation effect in multiple phases radiotherapy using the Linear Quadratic (LQ) model, submitted.
  30. E. Svensson, A.-B. Strömberg, and M. Patriksson, A scenario-based stochastic programming model for the optimization of process integration opportunities in a pulp mill, submitted, 2008.
  31. L. A. Waller, A. Särkkä, V. Olsbo, I. G. Panoutsopoulou, W. R. Kennedy, and G. Wendelschafer-Crabb, Second-order spatial analysis of epidermal nerve fibers, submitted, 2008.
  32. N. Wermuth, Probability distributions with summary graph structure, submitted to the Annals of Statistics, 2008.
  33. M. Wiedenbeck and N. Wermuth, Changing sets of parameters by partial mappings, Statistica Sinica (2008), accepted up to minor revision.

Working papers

  1. A. Bengtsson, K. Bogsjö, and I. Rychlik, Fatigue damage uncertainty, 2008.
  2. P. Gennemark, E. Ericson, J. Warringer, A. Blomberg, and O. Nerman, Experimental design and statistical considerations in high-throughput bio-assays, 2008.
  3. J. K. Jonasson, N. Lorén, J. Hagman, M. Nydén, and M. Rudemo, Likelihood analysis of FRAP data with nonparametric estimation of initial concentration, 2008.
  4. Å. Lönnqvist, Evolution of reliability thinking, reliability engineering response to some technical issues.
  5. Å. Lönnqvist, Including noise factors in Design-FMEA.
  6. D. Zholud, O. Nerman, H. Rootzén, and A. Blomberg, Positional effects in biological experiments.

Other publications

  1. S. Åberg and K. Podgórski, A class of non-Gaussian second order random fields, 2008.
  2. J. Almquist and N. Lämås, Mathematical modeling of a Xenopus laevis oocyte expressing the NBC and MCT membrane transporters – towards a better understanding of the neuron-glial interplay, thesis for the degree of master of science, Chalmers University of Technology, 2007.
  3. M. Anguelova, Observability and identifiability of nonlinear systems with applications in biology, Ph.D. thesis, Department of Mathematical Sciences, Chalmers University of Technology and University of Gothenburg, 2007.
  4. M. Anguelova and B. Wennberg, Input-output representation and identifiability of delay parameters for nonlinear systems with multiple time-delays, Topics in Time-Delay Systems: Analysis, Algorithms and Control, Lecture Notes in Control and Information Sciences, Springer, 2008, to be published.
  5. L. Arkeryd, Molecular gas dynamics, Transport Theory Statist. Phys. 36 (2007), 609–610.
  6. M. Arvidsson and B. Bergman, The Bergman-Hynén method for dispersion effects identification, Encyclopedia of Statistics in Quality and Reliability, Wiley, 2007, to appear.
  7. M. Arvidsson, I. Gremyr, and T. Hasenkamp, An operationalization of robust design methodology, 10th QMOD Conference (Quality Management and Organizational Development) (Helsingborg, Sweden), 18–20 June 2007.
  8. M. Åstrand, Normalization and differential gene expression analysis of microarray data, Ph.D. thesis, Department of Mathematical Sciences, Chalmers University of Technology and University of Gothenburg, 2008.
  9. B. Bergman, Stationary replacement strategies, Encyclopedia of Statistics in Quality and Reliability, Wiley, 2007, to appear.
  10. B. Bergman, J. de Maré, and T. Svensson (eds.), Robust design methodology for reliability, a collection of essays, book proposal has been accepted by Wiley.
  11. B. Bergman and B. Klefsjö, Total time on test plots, Encyclopedia of Statistics in Quality and Reliability, Wiley, 2007, to appear.
  12. P. Grabarnik and A. Särkkä, Discussion of «Modern statistics for spatial point processes», Scand. J. Statist. 34 (2007), no. 4, 691.
  13. O. Häggström, Discussion of «Modern statistics for spatial point processes», Scand. J. Statist. 34 (2007), no. 4, 693–694.
  14. A. Herbertsson, Default contagion in large homogeneous portfolios, The Credit Derivatives Handbook (G. N. Gregoriou and P. U. Ali, eds.), McGraw-Hill, 2008, ISBN 0071549528.
  15. P. Johannesson, B. Johannesson, T. Svensson, and M. Karlsson, Statistical analysis of constant and different variable amplitude spectra, Proceedings of Fatigue 2007 (Cambridge, UK), 26–28 March 2007.
  16. P. Johannesson, T. Svensson, and L. Samuelsson, Probabilistic variation mode and effect analysis: A case of an air engine component, 10th QMOD Conference (Quality Management and Organizational Development) (Helsingborg, Sweden), 18–20 June 2007.
  17. J. Johansson, Model reduction in biochemical reaction systems – a method based on time scale separation and state aggregation, thesis for the degree of master of science, Chalmers University of Technology, 2008.
  18. K. Käll and K. Viltersten, Simulating diffusion with Brownian dynamics using adaptive time-stepping, thesis for the degree of master of science, Chalmers University of Technology and University of Gothenburg, advised by M. Kvarnström, 2008.
  19. K. Kraft, Adaptive finite element methods for optimal control problems, thesis for the degree of licentiate of engineering, 2008.
  20. Å. Lönnqvist, Evolution of reliability thinking, 10th QMOD Conference (Quality Management and Organizational Development) (Helsingborg, Sweden), 18–20 June 2007.
  21. I. Rychlik and M. R. Leadbetter, Estimating capsize risk for a vessel in a following sea, ISI 2007 meeting (Lisbon), 2007, pp. 1–4.
  22. N. Skaar, Parameter estimation methods for continuous time dynamic systems given discrete time measurements, thesis for the degree of master of science, Chalmers University of Technology, 2008.
  23. J. Svensson, Assessment of residual life for opportunistic maintenance, Ph.D. thesis, Department of Mathematical Sciences, Chalmers University of Technology and University of Gothenburg, 2007.
  24. A. Westergård, Simulating diffusion with Brownian dynamics using an adaptive time-stepping algorithm, thesis for the degree of master of science, Chalmers University of Technology, advised by M. Kvarnström, 2006.
  25. P. Zarrineh, Development of parameter estimation methods for biochemical reaction systems, thesis for the degree of master of science, Chalmers University of Technology, 2007.

Book

  1. N. Wermuth and R. Streit, Einführung in statistische Analysen. Fragen beantworten mit Hilfe von Daten, Springer, Berlin, 2007 (in German).

Popularizing science

  1. L. Arkeryd, Rigorous infinitesimal, Amer. Math. Monthly 112 (2005), 926–928.
  2. O. Häggström, I svallvågorna av en parodi, Axess, no. 8/2008 (in Swedish).
  3. O. Häggström, Riktig vetenskap och dåliga imitationer, Fri Tanke Förlag, Stockholm, 2008 (in Swedish).
  4. O. Häggström, Arvet efter Darwin, Alba, no. 6/2006, and later also in Humanisten 1/2008 (in Swedish).
  5. O. Häggström, Blink och think, Tentakel, no. 4/2007, (in Swedish).
  6. O. Häggström, Dembski kontra Darwin, Folkvett, no. 2/2006, (in Swedish).
  7. O. Häggström, Det är svårt att sia – särskilt on framtiden, Axess, no. 6/2007, (in Swedish).
  8. O. Häggström, Duger det att stå utanför och se in?, Folkvett, no. 4/2006, (in Swedish).
  9. O. Häggström, Färgstark kvinna lockar filosofer, Axess, no. 4/2007, and later in a slightly expanded version with the heading Hur gick det för Mary? in Humanisten 5/2007 (in Swedish).
  10. O. Häggström, Gud och Darwin möts i bioteologin, Svenska Dagbladet, May 27, 2006, a longer version of the same paper appeared under the heading «Teologen och biologen – kan de nå varandra?» in Humanisten 2/2006 (in Swedish).
  11. O. Häggström, Pseudovetenskapen under luppen, Humanisten, no. 5/2006, (in Swedish).
  12. O. Häggström, Ramseys ekvation och planetens framtid, Nämnaren, no. 4/2007, (in Swedish).
  13. O. Häggström, Matematiken som antidarwinistiskt tillhygge, NORMAT – Nordisk Matematisk Tidskrift 54 (2006), 75–90, (in Swedish).
  14. O. Häggström, Att tänka långsiktigt – om marshmallows, räntor och koldioxidutsläpp, Konsumera mera – dyrköpt lycka (B. Johansson, ed.), Formas, Stockholm, 2007, (in Swedish), pp. 123–134.
  15. O. Häggström, Objective truth versus human understanding in mathematics and in chess, The Montana Mathematics Enthusiast 4 (2007), 140–153.
  16. O. Häggström, Att forska är ett äventyr – men se upp för alla fallgropar, Forskarhandledares robusta råd (Å. Bergenheim and K. Ågren, eds.), Studentlitteratur, 2008, (in Swedish), pp. 121–141.
  17. O. Häggström, Brister i sannolikhetsargument för och emot Guds existens, Filosofisk tidskrift (2008), no. 4 (in Swedish).
  18. O. Häggström, Att skilja vetenskap från pseudovetenskap: exemplet Stockholmsinitiativet, Folkvett, no. 4/2008 (in Swedish).

Computer software

  1. M. Anguelova, G. Cedersund, C.-J. Franzén, M. Johansson, and B. Wennberg, Mathematica code for identifiability analysis, 2007.
  2. M. Åstrand, wame.em, 2007, the R-package for the methods developed
  3. M. Åstrand, plw, 2008, an R implementation of Probe level Locally moderated Weighted median-t (PLW) and Locally Moderated Weighted-t (LMW)
  4. CellStat, Software demonstrator in Matlab with a graphical user interface for automated recognition and subsequent quantification of protein expressions in yeast cells.
  5. COSMO – A decision support system that integrates multiple criteria optimization and simulation.
  6. J. K. Jonasson, N. Lorén, P. Olofsson, M. Nydén, and M. Rudemo, MATLAB software for estimating the diffusion coefficient, 2008.
  7. K. Kraft, Lin-HADOC, an h-adaptive finite element solver for quadratic-linear optimal control problems.
  8. G. M. Marchetti and M. Drton, ggm – Graphical Gaussian Models, 2006, R-package implementing some first algorithms connected to the summary graph, compare G. M. Marchetti, Independencies induced from a graphical Markov model after marginalization and conditioning: the R package ggm, Journal of Statistical Software 15 (2006), no. 6.
  9. M. Sunnåker and M. Jirstrand, NLMEtools – a Matlab toolbox for nonlinear mixed effects modeling using stochastic differential equations, 2008.
  10. Systems biology toolbox for Matlab
  11. WAFO – a Matlab toolbox for the analysis of random waves and loads, 2008. GMMC is supporting preparation of the new version of the WAFO-manual by financing work of Pär Johannesson, FCC.

Published: Tue 27 Nov 2012. Modified: Thu 19 Sep 2019