Graham Kemp

Graham Kemp
Datavetenskap
kemp at chalmers dot se
+46 31 772 54 11

Member of the Bioinformatics group

Programme manager for the Master's programme in Computer Science.

 

Visiting address: Rännvägen 6

Room: 6475, 6th floor (EDIT-building)

 

Link to personal page

Publications 2011

Olsson, Caroline; Kemp, Graham J.L.: Standardizing radiation oncology data for future modelling of side effects after radiation therapy. 1st International Workshop on Managing Interoperability and compleXity in Health Systems, MIXHS'11, Collocated with the 20th ACM International Conference on Information and Knowledge Management, CIKM 2011 Glasgow 28 October 2011 through 28 October 2011, oct 28 pp. 67-70. ISBN/ISSN: 978-145030954-7

2010

Data Integration in the Life Sciences 7th International Conference, DILS 2010, Gothenburg, Sweden, August 25-27, 2010. Proceedings. Patrick Lambrix, Graham J.L. Kemp [editor(s)]. Berlin / Heidelberg : Springer. ISBN/ISSN: 978-3-642-15119-4

Mehio, W.; Kemp, Graham J.L.; Taylor, P.; Walkinshaw, M. D.: Identification of protein binding surfaces using surface triplet propensities. Bioinformatics, 26 (20) pp. 2549-2555.

Yeturu, Kalidas; Utriainen, Tapani; Kemp, Graham J.L.; Chandra, Nagasuma: An automated framework for understanding structural variations in the binding grooves of MHC class II molecules. BMC Bioinformatics, 11 (Suppl 1) pp. S55.

2009

Boulund, Fredrik; Jonsson, Viktor; Sterner, Erik; Kemp, Graham J.L.: An analytical solution for finding voids and bottlenecks within macromolecules. 3DSig 2009: The 5th Structural Bioinformatics and Computational Biophysics Meeting, Stockholm, Sweden, 27-28 June 2009, pp. 77-78.

Karjalainen, Merja; Kemp, Graham J.L.: Uniform Query Processing in a Federation of RDFS and Relational Resources. International Database Engineering and Applications Symposium (IDEAS'09), Proceedings, pp. 315-320. ISBN/ISSN: 978-1-60558-402-7

Mehio, Wissam; Kemp, Graham J.L.; Taylor, Paul; Walkinshaw, Malcolm D.: STP: A Program to Predict Protein Binding Surfaces. 3DSig 2009: The 5th Structural Bioinformatics and Computational Biophysics Meeting, Stockholm, Sweden, 27-28 June 2009, pp. 51-52.

Selpi, .; Bryant, Christopher H.; Kemp, Graham J.L.; Sarv, Janeli; Kristiansson, Erik; Sunnerhagen, Per: Predicting functional upstream open reading frames in Saccharomyces cerevisiae. BMC Bioinformatics, 10 pp. 451.

Yeturu, Kalidas; Kemp, Graham J.L.; Chandra, Nagasuma: Deriving binding site signatures in MHC Class II molecules, using a novel algorithm. 17th Annual International Conference on Intelligent Systems for Molecular Biology & 8th European Conference on Computational Biology (ISMB/ECCB 2009), Stockholm, Sweden, 27 June to 2 July 2009,

2008

Chalmers, Stuart; Nilsson, Josef; Edler, Håkan; Kemp, Graham J.L.: An Ontology-Based Approach to Car Simulation and Design. Third Asian Semantic Web Conference, ASWC2008 Bangkok, Thailand December 2008, Workshops Proceedings, pp. 270-275.

Martins, João; Nunes, Rui; Karjalainen, Merja; Kemp, Graham J.L.: A Functional Data Model Approach to Querying RDF/RDFS Data. Gray, A., Jeffery, K. and Shao, J. (eds.) Sharing Data, Information and Knowledge: 25th British National Conference on Databases, BNCOD 25, Cardiff, UK, July 7-10, 2008. Proceedings. Lecture Notes in Computer Science., 5071 pp. 153-164. ISBN/ISSN: 978-3-540-70503-1

Selpi, .; Bryant, C. H.; Kemp, Graham J.L.: Using mRNA Secondary Structure Predictions Improves Recognition of Known Yeast Functional uORFs. Wehenkel, L., d'Alché-Buc, F., Moreau, Y. and Geurts, P. (eds.) MLSB08, The Second International Workshop on Machine Learning in Systems Biology, Brussels, 13-14 September 2008., pp. 85-93.

2007

Cvijovic, Marija; Dalevi, Daniel; Bilsland, Elizabeth; Kemp, Graham J.L.; Sunnerhagen, Per: Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation. BMC Bioinformatics, 8 pp. 295.

Fernandez-Ricaud, Luciano; Warringer, Jonas; Ericson, Elke; Glaab, Kerstin; Davidsson, Pär; Nilsson, Fabian; Kemp, Graham J.L.; Nerman, Olle; Blomberg, Anders: PROPHECY—a yeast phenome database, update 2006. Nucleic Acids Research, 35 pp. D463-D467.

Mehio, Wissam; Kemp, Graham J.L.: Using surface patch profiles to predict protein-protein binding surfaces. 3DSig: The 3rd Structural Bioinformatics and Computational Biophysics Meeting, Vienna, Austria, 19-20 July 2007, pp. 43-44.

Selpi, .; Bryant, C. H.; Kemp, Graham J.L.; Cvijovic, M.: Using Inductive Logic Programming to Predict Functional Upstream Open Reading Frames in Yeast. 15th Annual International Conference on Intelligent Systems for Molecular Biology & 6th European Conference on Computational Biology (ISMB/ECCB 2007), Vienna, Austria, 21-25 July 2007,

Utriainen, Tapani; Kemp, Graham J.L.: Using long fragments to reconstruct RNA backbones. Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, pp. 1424-1428. ISBN/ISSN: 1-4244-1509-8

2006

Gray, P. M. D.; Kemp, Graham J.L.: Capturing Quantified Constraints in FOL, Through Interaction with a Relationship Graph. Managing Knowledge in a World of Networks: 15th International Conference, EKAW 2006, Lecture Notes in Computer Science, 4248 pp. 19-26. ISBN/ISSN: 978-3-540-46363-4

Selpi, .; Bryant, C. H.; Kemp, Graham J.L.; Cvijovic, M.: A First Step towards Learning which uORFs Regulate Gene Expression. Journal of Integrative Bioinformatics, 3 (2) pp. 31.

2005

Kemp, Graham J.L.: Models of Database Interconnectivity. Database Annotation in Molecular Biology: Principles and Practice, pp. 203-221. ISBN/ISSN: 0-470-85681-5

Kemp, Graham J.L.; Selpi, .; Karjalainen, Merja: Using the Functional Data Model to Store and Query Recursive Biological Data. Workshop on Database Issues in Biological Databases (DBiBD),8-9 January 2005, Edinburgh, UK , pp. 24-28.

Nyholm, Per-Georg; Nahmany, Avi; Strino, Francesco; Kemp, Graham J.L.; Rosen, Jimmy: The use of a genetic algorithm search for molecular mechanics (MM3)-based conformational analysis of oligosaccharides.. Carbohydrate Research, 340 (5) pp. 1059-1064.

Strino, Francesco; Nahmany, Avi; Rosen, Jimmy; Kemp, Graham J.L.; Sá-correia, Isabel; Nyholm, Per-Georg: Conformation of the exopolysaccharide of Burkholderia cepacia predicted with molecular mechanics (MM3) using genetic algorithm search.. Carbohydrate Research, 340 (5) pp. 1019-1024.

Swain, Martin T.; Brooks, Anthony J.; Kemp, Graham J.L.: Predicting peptide interactions with model class II MHC structures. International Journal on Artificial Intelligence Tools, 14 (4) pp. 561-575.

2004

Gray, Peter M.D.; Kemp, Graham J.L.: An Expressive Functional Data Model and Query Language for Bioinformatics Data Integration. The Functional Approach to Data Management: Modeling, Analyzing and Integrating Heterogeneous Data, pp. 166-188. ISBN/ISSN: 3-540-00375-4

Kemp, Graham J.L.; Gray, Peter M.D.; Embury, Suzanne M.: Optimisation Strategies for Functional Queries in a Distributed Environment. The Functional Approach to Data Management: Modeling, Analyzing and Integrating Heterogeneous Data, pp. 189-210. ISBN/ISSN: 3-540-00375-4

Kemp, Graham J.L.; Selpi, .: Pathway and Protein Interaction Data: from XML to FDM Database. Lecture Notes in Computer Science, 2994 pp. 212-219. ISBN/ISSN: 3-540-21300-7

Koussounadis, Antonis I.; Ritchie, David W.; Kemp, Graham J.L.; Secombes, Chris J.: Analysis of Fish IL-1beta and Derived Peptide Sequences Indicates Conserved Structures with Species-Specific IL-1 Receptor Binding: Implications for Pharmacological Design. Current Pharmaceutical Design, 10 (31) pp. 3857-3871.

2003

Kemp, Graham J.L.; Gray, Peter M.D.: P/FDM Mediator for a Bioinformatics Database Federation. Bioinformatics: Managing Scientific Data, pp. 249-275. ISBN/ISSN: 155860829X

2002

Kemp, Graham J.L.; Angelopoulos, Nicos; Gray, Peter M.D.: Architecture of a mediator for a bioinformatics database federation. IEEE transactions on information technology in biomedicine, 6 (2) pp. 116-122.

Kemp, Graham J.L.; Gray, Peter M. D.: Modelling Biological Data in Hierarchies. 10th International Conference on Intelligent Systems for Molecular Biology, Edmonton, Canada, 3-7 August 2002,

Last modified: April 05, 2011

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COMPUTER SCIENCE AND ENGINEERING - Chalmers University of Technology and University of Gothenburg
SE-412 96 Gothenburg, Sweden - Tel: +46 (0)31- 772 1000